R-3.3-branch, mavericks, x86_64

check   conf   build   
check - Mar 28 22:41:11 2017

Testing examples for package 'base' Testing examples for package 'tools' comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK Testing examples for package 'utils' Testing examples for package 'grDevices' comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK Testing examples for package 'graphics' comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK Testing examples for package 'stats' comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK Testing examples for package 'datasets' comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK Testing examples for package 'methods' Testing examples for package 'grid' comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK Testing examples for package 'splines' comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK Testing examples for package 'stats4' comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK Testing examples for package 'tcltk' Testing examples for package 'compiler' Testing examples for package 'parallel' running strict specific tests running code in '../../../R-3.3-branch/tests/eval-etc.R' ... OK comparing 'eval-etc.Rout' to '../../../R-3.3-branch/tests/eval-etc.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/simple-true.R' ... OK comparing 'simple-true.Rout' to '../../../R-3.3-branch/tests/simple-true.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/arith-true.R' ... OK comparing 'arith-true.Rout' to '../../../R-3.3-branch/tests/arith-true.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/arith.R' ... OK comparing 'arith.Rout' to '../../../R-3.3-branch/tests/arith.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/lm-tests.R' ... OK comparing 'lm-tests.Rout' to '../../../R-3.3-branch/tests/lm-tests.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/ok-errors.R' ... OK comparing 'ok-errors.Rout' to '../../../R-3.3-branch/tests/ok-errors.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to '../../../R-3.3-branch/tests/method-dispatch.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/any-all.R' ... OK comparing 'any-all.Rout' to '../../../R-3.3-branch/tests/any-all.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/d-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to '../../../R-3.3-branch/tests/d-p-q-r-tests.Rout.save' ... OK running sloppy specific tests running code in '../../../R-3.3-branch/tests/complex.R' ... OK comparing 'complex.Rout' to '../../../R-3.3-branch/tests/complex.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/print-tests.R' ... OK comparing 'print-tests.Rout' to '../../../R-3.3-branch/tests/print-tests.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/lapack.R' ... OK comparing 'lapack.Rout' to '../../../R-3.3-branch/tests/lapack.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/datasets.R' ... OK comparing 'datasets.Rout' to '../../../R-3.3-branch/tests/datasets.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/datetime.R' ... OK comparing 'datetime.Rout' to '../../../R-3.3-branch/tests/datetime.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/iec60559.R' ... OK comparing 'iec60559.Rout' to '../../../R-3.3-branch/tests/iec60559.Rout.save' ... OK running regression tests ... running code in '../../../R-3.3-branch/tests/array-subset.R' ... OK running code in '../../../R-3.3-branch/tests/reg-tests-1a.R' ... OK running code in '../../../R-3.3-branch/tests/reg-tests-1b.R' ... OK running code in '../../../R-3.3-branch/tests/reg-tests-1c.R' ... OK running code in '../../../R-3.3-branch/tests/reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to '../../../R-3.3-branch/tests/reg-tests-2.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/reg-examples1.R' ... OK running code in '../../../R-3.3-branch/tests/reg-examples2.R' ... OK running code in '../../../R-3.3-branch/tests/reg-packages.R' ... OK running code in '../../../R-3.3-branch/tests/p-qbeta-strict-tst.R' ... OK running code in '../../../R-3.3-branch/tests/r-strict-tst.R' ... OK running code in '../../../R-3.3-branch/tests/reg-IO.R' ... OK comparing 'reg-IO.Rout' to '../../../R-3.3-branch/tests/reg-IO.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to '../../../R-3.3-branch/tests/reg-IO2.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/reg-plot.R' ... OK comparing 'reg-plot.pdf' to '../../../R-3.3-branch/tests/reg-plot.pdf.save' ... OK running code in '../../../R-3.3-branch/tests/reg-S4.R' ... OK comparing 'reg-S4.Rout' to '../../../R-3.3-branch/tests/reg-S4.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/reg-S4-examples.R' ... OK running code in '../../../R-3.3-branch/tests/reg-BLAS.R' ... OK running code in '../../../R-3.3-branch/tests/reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to '../../../R-3.3-branch/tests/reg-tests-3.Rout.save' ... OK running code in '../../../R-3.3-branch/tests/reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to '../../../R-3.3-branch/tests/reg-examples3.Rout.save' ...304c304 < Achieved convergence tolerance: 9.33e-07 --- > Achieved convergence tolerance: 9.32e-07 OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in '../../../R-3.3-branch/tests/reg-plot-latin1.R' ... FAILED running tests of Internet functions expect some differences running code in '../../../R-3.3-branch/tests/internet.R' ... OK comparing 'internet.Rout' to '../../../R-3.3-branch/tests/internet.Rout.save' ...11c11 < [1] 10327 --- > [1] 10142 OK [[system return code 0x0]]
conf - Mar 28 22:31:12 2017
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(cached) yes checking whether the gfortran-4.8 linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.4.0 dyld checking how to hardcode library paths into programs... immediate checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran-4.8 option to support OpenMP... -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a thread-safe mkdir -p... ../../R-3.3-branch/tools/install-sh -c -d checking whether we are using the GNU C Library 2 or newer... no checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for shared library run path origin... done checking whether imported symbols can be declared weak... no checking for multithread API to use... none checking argz.h usability... no checking argz.h presence... no checking for argz.h... no checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) no checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... no checking for argz_stringify... no checking for argz_next... no checking for __fsetlocking... no checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... no checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... no checking for bison... bison checking version of bison... 2.3, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... no checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... yes checking for CFLocaleCopyCurrent... yes checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) yes checking for CFLocaleCopyCurrent... (cached) yes checking whether included gettext is requested... no checking for GNU gettext in libc... no checking for GNU gettext in libintl... no checking whether to use NLS... yes checking where the gettext function comes from... included intl directory Finished configuring src/extra/intl directory using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/f77_f2c config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands R is now configured for x86_64-apple-darwin13.4.0 Source directory: ../../R-3.3-branch Installation directory: /Library/Frameworks C compiler: clang -Wall -mtune=core2 -g -O2 Fortran 77 compiler: gfortran-4.8 -g -O2 C++ compiler: clang++ -Wall -mtune=core2 -g -O2 C++11 compiler: clang++ -std=c++11 -Wall -mtune=core2 -g -O2 Fortran 90/95 compiler: gfortran-4.8 -Wall -g -O2 Obj-C compiler: clang -Wall -mtune=core2 -g -O2 -fobjc-exceptions Interfaces supported: X11, aqua, tcltk External libraries: readline, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: framework, shared BLAS, R profiling, memory profiling Capabilities skipped: Options not enabled: Recommended packages: yes [[system return code 0x0]]
build - Mar 28 22:38:44 2017
creating RESOURCES
creating doc/html/resources.html
creating FAQ
make[1]: Nothing to be done for `R'.
make[1]: Nothing to be done for `R'.
make[2]: Nothing to be done for `R'.
mkdir ../share/R
mkdir ../share/dictionaries
mkdir ../share/encodings
mkdir ../share/java
mkdir ../share/licenses
mkdir ../share/make
mkdir ../share/Rd
mkdir ../share/Rd/macros
mkdir ../share/sh
mkdir ../share/texmf
mkdir ../share/texmf/bibtex
mkdir ../share/texmf/bibtex/bib
mkdir ../share/texmf/bibtex/bst
mkdir ../share/texmf/tex
mkdir ../share/texmf/tex/latex
creating src/scripts/R.fe
mkdir ../../bin
mkdir ../../include
mkdir ../../../include/R_ext
gfortran-4.8  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.3-branch/src/extra/blas/blas.f -o blas.o
gfortran-4.8  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.3-branch/src/extra/blas/cmplxblas.f -o cmplxblas.o
making localtime.d from ../../../../../R-3.3-branch/src/extra/tzone/localtime.c
making strftime.d from ../../../../../R-3.3-branch/src/extra/tzone/strftime.c
making regerror.d from ../../../../../R-3.3-branch/src/extra/tre/regerror.c
making regcomp.d from ../../../../../R-3.3-branch/src/extra/tre/regcomp.c
making regexec.d from ../../../../../R-3.3-branch/src/extra/tre/regexec.c
making tre-ast.d from ../../../../../R-3.3-branch/src/extra/tre/tre-ast.c
making tre-compile.d from ../../../../../R-3.3-branch/src/extra/tre/tre-compile.c
making tre-match-approx.d from ../../../../../R-3.3-branch/src/extra/tre/tre-match-approx.c
making tre-match-backtrack.d from ../../../../../R-3.3-branch/src/extra/tre/tre-match-backtrack.c
making tre-match-parallel.d from ../../../../../R-3.3-branch/src/extra/tre/tre-match-parallel.c
making tre-mem.d from ../../../../../R-3.3-branch/src/extra/tre/tre-mem.c
making tre-parse.d from ../../../../../R-3.3-branch/src/extra/tre/tre-parse.c
making tre-stack.d from ../../../../../R-3.3-branch/src/extra/tre/tre-stack.c
making xmalloc.d from ../../../../../R-3.3-branch/src/extra/tre/xmalloc.c
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/tzone -I../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H  -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tzone/localtime.c -o localtime.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/tzone -I../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H  -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tzone/strftime.c -o strftime.o
making bindtextdom.d from ../../../../../R-3.3-branch/src/extra/intl/bindtextdom.c
making dcgettext.d from ../../../../../R-3.3-branch/src/extra/intl/dcgettext.c
making dgettext.d from ../../../../../R-3.3-branch/src/extra/intl/dgettext.c
making finddomain.d from ../../../../../R-3.3-branch/src/extra/intl/finddomain.c
making gettext.d from ../../../../../R-3.3-branch/src/extra/intl/gettext.c
making textdomain.d from ../../../../../R-3.3-branch/src/extra/intl/textdomain.c
making loadmsgcat.d from ../../../../../R-3.3-branch/src/extra/intl/loadmsgcat.c
making l10nflist.d from ../../../../../R-3.3-branch/src/extra/intl/l10nflist.c
making explodename.d from ../../../../../R-3.3-branch/src/extra/intl/explodename.c
making dcigettext.d from ../../../../../R-3.3-branch/src/extra/intl/dcigettext.c
making dcngettext.d from ../../../../../R-3.3-branch/src/extra/intl/dcngettext.c
making dngettext.d from ../../../../../R-3.3-branch/src/extra/intl/dngettext.c
making ngettext.d from ../../../../../R-3.3-branch/src/extra/intl/ngettext.c
making plural.d from ../../../../../R-3.3-branch/src/extra/intl/plural.c
making plural-exp.d from ../../../../../R-3.3-branch/src/extra/intl/plural-exp.c
ar -cr libtz.a localtime.o strftime.o
making langprefs.d from ../../../../../R-3.3-branch/src/extra/intl/langprefs.c
making localcharset.d from ../../../../../R-3.3-branch/src/extra/intl/localcharset.c
making localename.d from ../../../../../R-3.3-branch/src/extra/intl/localename.c
making printf.d from ../../../../../R-3.3-branch/src/extra/intl/printf.c
making osdep.d from ../../../../../R-3.3-branch/src/extra/intl/osdep.c
making hash-string.d from ../../../../../R-3.3-branch/src/extra/intl/hash-string.c
making intl-compat.d from ../../../../../R-3.3-branch/src/extra/intl/intl-compat.c
making lock.d from ../../../../../R-3.3-branch/src/extra/intl/lock.c
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/regcomp.c -o regcomp.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/regerror.c -o regerror.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/regexec.c -o regexec.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/tre-ast.c -o tre-ast.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/tre-compile.c -o tre-compile.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/tre-match-approx.c -o tre-match-approx.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/tre-match-backtrack.c -o tre-match-backtrack.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/tre-match-parallel.c -o tre-match-parallel.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/tre-mem.c -o tre-mem.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/tre-parse.c -o tre-parse.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/tre-stack.c -o tre-stack.o
clang -I../../../../../R-3.3-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H    -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/tre/xmalloc.c -o xmalloc.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/bindtextdom.c -o bindtextdom.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/dcgettext.c -o dcgettext.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/dgettext.c -o dgettext.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/gettext.c -o gettext.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/finddomain.c -o finddomain.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/loadmsgcat.c -o loadmsgcat.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/textdomain.c -o textdomain.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/l10nflist.c -o l10nflist.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/explodename.c -o explodename.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/dcigettext.c -o dcigettext.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/dcngettext.c -o dcngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/dngettext.c -o dngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/ngettext.c -o ngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/plural.c -o plural.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/plural-exp.c -o plural-exp.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/langprefs.c -o langprefs.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/localcharset.c -o localcharset.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/localename.c -o localename.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/printf.c -o printf.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/osdep.c -o osdep.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/intl-compat.c -o intl-compat.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/hash-string.c -o hash-string.o
clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I../../../../../R-3.3-branch/src/extra/intl -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -mtune=core2 -g -O2   -c ../../../../../R-3.3-branch/src/extra/intl/lock.c -o lock.o
ar -cr libintl.a bindtextdom.o dcgettext.o dgettext.o gettext.o finddomain.o loadmsgcat.o textdomain.o l10nflist.o explodename.o dcigettext.o dcngettext.o dngettext.o ngettext.o plural.o plural-exp.o langprefs.o localcharset.o localename.o printf.o osdep.o intl-compat.o hash-string.o lock.o

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols ranlib libintl.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o libRblas.dylib blas.o cmplxblas.o -install_name libRblas.dylib -headerpad_max_install_names -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm mkdir /Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib making integrate.d from ../../../../R-3.3-branch/src/appl/integrate.c making interv.d from ../../../../R-3.3-branch/src/appl/interv.c making maxcol.d from ../../../../R-3.3-branch/src/appl/maxcol.c making optim.d from ../../../../R-3.3-branch/src/appl/optim.c making pretty.d from ../../../../R-3.3-branch/src/appl/pretty.c making uncmin.d from ../../../../R-3.3-branch/src/appl/uncmin.c clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/appl/integrate.c -o integrate.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/appl/interv.c -o interv.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/appl/maxcol.c -o maxcol.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/appl/optim.c -o optim.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/appl/pretty.c -o pretty.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/appl/uncmin.c -o uncmin.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dchdc.f -o dchdc.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dpbfa.f -o dpbfa.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dpbsl.f -o dpbsl.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dpoco.f -o dpoco.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dpodi.f -o dpodi.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dpofa.f -o dpofa.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dposl.f -o dposl.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dqrdc.f -o dqrdc.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dqrdc2.f -o dqrdc2.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dqrls.f -o dqrls.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dqrsl.f -o dqrsl.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dqrutl.f -o dqrutl.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dsvdc.f -o dsvdc.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dtrco.f -o dtrco.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/appl/dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a making mlutils.d from ../../../../R-3.3-branch/src/nmath/mlutils.c making d1mach.d from ../../../../R-3.3-branch/src/nmath/d1mach.c making i1mach.d from ../../../../R-3.3-branch/src/nmath/i1mach.c making fmax2.d from ../../../../R-3.3-branch/src/nmath/fmax2.c making fmin2.d from ../../../../R-3.3-branch/src/nmath/fmin2.c making fprec.d from ../../../../R-3.3-branch/src/nmath/fprec.c making fround.d from ../../../../R-3.3-branch/src/nmath/fround.c making ftrunc.d from ../../../../R-3.3-branch/src/nmath/ftrunc.c making imax2.d from ../../../../R-3.3-branch/src/nmath/imax2.c making sign.d from ../../../../R-3.3-branch/src/nmath/sign.c making fsign.d from ../../../../R-3.3-branch/src/nmath/fsign.c making imin2.d from ../../../../R-3.3-branch/src/nmath/imin2.c making chebyshev.d from ../../../../R-3.3-branch/src/nmath/chebyshev.c making log1p.d from ../../../../R-3.3-branch/src/nmath/log1p.c making lgammacor.d from ../../../../R-3.3-branch/src/nmath/lgammacor.c making expm1.d from ../../../../R-3.3-branch/src/nmath/expm1.c making gammalims.d from ../../../../R-3.3-branch/src/nmath/gammalims.c making stirlerr.d from ../../../../R-3.3-branch/src/nmath/stirlerr.c making bd0.d from ../../../../R-3.3-branch/src/nmath/bd0.c making gamma.d from ../../../../R-3.3-branch/src/nmath/gamma.c making lgamma.d from ../../../../R-3.3-branch/src/nmath/lgamma.c making gamma_cody.d from ../../../../R-3.3-branch/src/nmath/gamma_cody.c making beta.d from ../../../../R-3.3-branch/src/nmath/beta.c making cospi.d from ../../../../R-3.3-branch/src/nmath/cospi.c making lbeta.d from ../../../../R-3.3-branch/src/nmath/lbeta.c making polygamma.d from ../../../../R-3.3-branch/src/nmath/polygamma.c making bessel_i.d from ../../../../R-3.3-branch/src/nmath/bessel_i.c making bessel_j.d from ../../../../R-3.3-branch/src/nmath/bessel_j.c making bessel_k.d from ../../../../R-3.3-branch/src/nmath/bessel_k.c making bessel_y.d from ../../../../R-3.3-branch/src/nmath/bessel_y.c making snorm.d from ../../../../R-3.3-branch/src/nmath/snorm.c making choose.d from ../../../../R-3.3-branch/src/nmath/choose.c making sexp.d from ../../../../R-3.3-branch/src/nmath/sexp.c making dgamma.d from ../../../../R-3.3-branch/src/nmath/dgamma.c making pgamma.d from ../../../../R-3.3-branch/src/nmath/pgamma.c making qgamma.d from ../../../../R-3.3-branch/src/nmath/qgamma.c making rgamma.d from ../../../../R-3.3-branch/src/nmath/rgamma.c making dbeta.d from ../../../../R-3.3-branch/src/nmath/dbeta.c making pbeta.d from ../../../../R-3.3-branch/src/nmath/pbeta.c making qbeta.d from ../../../../R-3.3-branch/src/nmath/qbeta.c making rbeta.d from ../../../../R-3.3-branch/src/nmath/rbeta.c making dunif.d from ../../../../R-3.3-branch/src/nmath/dunif.c making punif.d from ../../../../R-3.3-branch/src/nmath/punif.c making qunif.d from ../../../../R-3.3-branch/src/nmath/qunif.c making runif.d from ../../../../R-3.3-branch/src/nmath/runif.c making dnorm.d from ../../../../R-3.3-branch/src/nmath/dnorm.c making qnorm.d from ../../../../R-3.3-branch/src/nmath/qnorm.c making pnorm.d from ../../../../R-3.3-branch/src/nmath/pnorm.c making rnorm.d from ../../../../R-3.3-branch/src/nmath/rnorm.c making dlnorm.d from ../../../../R-3.3-branch/src/nmath/dlnorm.c making plnorm.d from ../../../../R-3.3-branch/src/nmath/plnorm.c making qlnorm.d from ../../../../R-3.3-branch/src/nmath/qlnorm.c making df.d from ../../../../R-3.3-branch/src/nmath/df.c making rlnorm.d from ../../../../R-3.3-branch/src/nmath/rlnorm.c making pf.d from ../../../../R-3.3-branch/src/nmath/pf.c making qf.d from ../../../../R-3.3-branch/src/nmath/qf.c making rf.d from ../../../../R-3.3-branch/src/nmath/rf.c making dnf.d from ../../../../R-3.3-branch/src/nmath/dnf.c making dt.d from ../../../../R-3.3-branch/src/nmath/dt.c making pt.d from ../../../../R-3.3-branch/src/nmath/pt.c making qt.d from ../../../../R-3.3-branch/src/nmath/qt.c making rt.d from ../../../../R-3.3-branch/src/nmath/rt.c making dnt.d from ../../../../R-3.3-branch/src/nmath/dnt.c making dchisq.d from ../../../../R-3.3-branch/src/nmath/dchisq.c making pchisq.d from ../../../../R-3.3-branch/src/nmath/pchisq.c making qchisq.d from ../../../../R-3.3-branch/src/nmath/qchisq.c making rchisq.d from ../../../../R-3.3-branch/src/nmath/rchisq.c making rnchisq.d from ../../../../R-3.3-branch/src/nmath/rnchisq.c making dbinom.d from ../../../../R-3.3-branch/src/nmath/dbinom.c making pbinom.d from ../../../../R-3.3-branch/src/nmath/pbinom.c making qbinom.d from ../../../../R-3.3-branch/src/nmath/qbinom.c making rbinom.d from ../../../../R-3.3-branch/src/nmath/rbinom.c making rmultinom.d from ../../../../R-3.3-branch/src/nmath/rmultinom.c making dcauchy.d from ../../../../R-3.3-branch/src/nmath/dcauchy.c making pcauchy.d from ../../../../R-3.3-branch/src/nmath/pcauchy.c making qcauchy.d from ../../../../R-3.3-branch/src/nmath/qcauchy.c making rcauchy.d from ../../../../R-3.3-branch/src/nmath/rcauchy.c making dexp.d from ../../../../R-3.3-branch/src/nmath/dexp.c making pexp.d from ../../../../R-3.3-branch/src/nmath/pexp.c making qexp.d from ../../../../R-3.3-branch/src/nmath/qexp.c making rexp.d from ../../../../R-3.3-branch/src/nmath/rexp.c making dgeom.d from ../../../../R-3.3-branch/src/nmath/dgeom.c making pgeom.d from ../../../../R-3.3-branch/src/nmath/pgeom.c making qgeom.d from ../../../../R-3.3-branch/src/nmath/qgeom.c making phyper.d from ../../../../R-3.3-branch/src/nmath/phyper.c making rgeom.d from ../../../../R-3.3-branch/src/nmath/rgeom.c making dhyper.d from ../../../../R-3.3-branch/src/nmath/dhyper.c making qhyper.d from ../../../../R-3.3-branch/src/nmath/qhyper.c making rhyper.d from ../../../../R-3.3-branch/src/nmath/rhyper.c making dnbinom.d from ../../../../R-3.3-branch/src/nmath/dnbinom.c making pnbinom.d from ../../../../R-3.3-branch/src/nmath/pnbinom.c making qnbinom.d from ../../../../R-3.3-branch/src/nmath/qnbinom.c making rnbinom.d from ../../../../R-3.3-branch/src/nmath/rnbinom.c making dpois.d from ../../../../R-3.3-branch/src/nmath/dpois.c making ppois.d from ../../../../R-3.3-branch/src/nmath/ppois.c making rpois.d from ../../../../R-3.3-branch/src/nmath/rpois.c making qpois.d from ../../../../R-3.3-branch/src/nmath/qpois.c making dweibull.d from ../../../../R-3.3-branch/src/nmath/dweibull.c making pweibull.d from ../../../../R-3.3-branch/src/nmath/pweibull.c making qweibull.d from ../../../../R-3.3-branch/src/nmath/qweibull.c making rweibull.d from ../../../../R-3.3-branch/src/nmath/rweibull.c making dlogis.d from ../../../../R-3.3-branch/src/nmath/dlogis.c making plogis.d from ../../../../R-3.3-branch/src/nmath/plogis.c making qlogis.d from ../../../../R-3.3-branch/src/nmath/qlogis.c making rlogis.d from ../../../../R-3.3-branch/src/nmath/rlogis.c making dnchisq.d from ../../../../R-3.3-branch/src/nmath/dnchisq.c making pnchisq.d from ../../../../R-3.3-branch/src/nmath/pnchisq.c making qnchisq.d from ../../../../R-3.3-branch/src/nmath/qnchisq.c making dnbeta.d from ../../../../R-3.3-branch/src/nmath/dnbeta.c making pnbeta.d from ../../../../R-3.3-branch/src/nmath/pnbeta.c making qnbeta.d from ../../../../R-3.3-branch/src/nmath/qnbeta.c making pnf.d from ../../../../R-3.3-branch/src/nmath/pnf.c making pnt.d from ../../../../R-3.3-branch/src/nmath/pnt.c making ptukey.d from ../../../../R-3.3-branch/src/nmath/ptukey.c making qnt.d from ../../../../R-3.3-branch/src/nmath/qnt.c making qnf.d from ../../../../R-3.3-branch/src/nmath/qnf.c making qtukey.d from ../../../../R-3.3-branch/src/nmath/qtukey.c making wilcox.d from ../../../../R-3.3-branch/src/nmath/wilcox.c making toms708.d from ../../../../R-3.3-branch/src/nmath/toms708.c making signrank.d from ../../../../R-3.3-branch/src/nmath/signrank.c clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/mlutils.c -o mlutils.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/d1mach.c -o d1mach.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/i1mach.c -o i1mach.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/fmax2.c -o fmax2.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/fmin2.c -o fmin2.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/fprec.c -o fprec.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/fround.c -o fround.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/ftrunc.c -o ftrunc.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/sign.c -o sign.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/fsign.c -o fsign.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/imax2.c -o imax2.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/imin2.c -o imin2.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/chebyshev.c -o chebyshev.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/log1p.c -o log1p.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/expm1.c -o expm1.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/lgammacor.c -o lgammacor.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/gammalims.c -o gammalims.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/stirlerr.c -o stirlerr.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/bd0.c -o bd0.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/gamma.c -o gamma.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/lgamma.c -o lgamma.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/gamma_cody.c -o gamma_cody.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/beta.c -o beta.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/lbeta.c -o lbeta.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/polygamma.c -o polygamma.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/cospi.c -o cospi.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/bessel_i.c -o bessel_i.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/bessel_j.c -o bessel_j.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/bessel_k.c -o bessel_k.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/bessel_y.c -o bessel_y.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/choose.c -o choose.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/snorm.c -o snorm.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/sexp.c -o sexp.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dgamma.c -o dgamma.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pgamma.c -o pgamma.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qgamma.c -o qgamma.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rgamma.c -o rgamma.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dbeta.c -o dbeta.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pbeta.c -o pbeta.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qbeta.c -o qbeta.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rbeta.c -o rbeta.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dunif.c -o dunif.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/punif.c -o punif.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qunif.c -o qunif.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/runif.c -o runif.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dnorm.c -o dnorm.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pnorm.c -o pnorm.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qnorm.c -o qnorm.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rnorm.c -o rnorm.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dlnorm.c -o dlnorm.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/plnorm.c -o plnorm.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qlnorm.c -o qlnorm.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rlnorm.c -o rlnorm.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/df.c -o df.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pf.c -o pf.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qf.c -o qf.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rf.c -o rf.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dnf.c -o dnf.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dt.c -o dt.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pt.c -o pt.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qt.c -o qt.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rt.c -o rt.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dnt.c -o dnt.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dchisq.c -o dchisq.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pchisq.c -o pchisq.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qchisq.c -o qchisq.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rchisq.c -o rchisq.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rnchisq.c -o rnchisq.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dbinom.c -o dbinom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pbinom.c -o pbinom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qbinom.c -o qbinom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rbinom.c -o rbinom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rmultinom.c -o rmultinom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dcauchy.c -o dcauchy.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pcauchy.c -o pcauchy.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qcauchy.c -o qcauchy.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rcauchy.c -o rcauchy.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dexp.c -o dexp.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pexp.c -o pexp.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qexp.c -o qexp.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rexp.c -o rexp.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dgeom.c -o dgeom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pgeom.c -o pgeom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qgeom.c -o qgeom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rgeom.c -o rgeom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dhyper.c -o dhyper.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/phyper.c -o phyper.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qhyper.c -o qhyper.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rhyper.c -o rhyper.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dnbinom.c -o dnbinom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pnbinom.c -o pnbinom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qnbinom.c -o qnbinom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rnbinom.c -o rnbinom.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dpois.c -o dpois.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/ppois.c -o ppois.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qpois.c -o qpois.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rpois.c -o rpois.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dweibull.c -o dweibull.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pweibull.c -o pweibull.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qweibull.c -o qweibull.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rweibull.c -o rweibull.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dlogis.c -o dlogis.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/plogis.c -o plogis.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qlogis.c -o qlogis.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/rlogis.c -o rlogis.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dnchisq.c -o dnchisq.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pnchisq.c -o pnchisq.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qnchisq.c -o qnchisq.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/dnbeta.c -o dnbeta.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pnbeta.c -o pnbeta.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qnbeta.c -o qnbeta.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pnf.c -o pnf.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/pnt.c -o pnt.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qnf.c -o qnf.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qnt.c -o qnt.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/ptukey.c -o ptukey.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/qtukey.c -o qtukey.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/toms708.c -o toms708.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/wilcox.c -o wilcox.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/nmath/signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(expm1.o) has no symbols ranlib libnmath.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(expm1.o) has no symbols config.status: creating src/unix/Makefile making Rembedded.d from ../../../../R-3.3-branch/src/unix/Rembedded.c making dynload.d from ../../../../R-3.3-branch/src/unix/dynload.c making system.d from ../../../../R-3.3-branch/src/unix/system.c making sys-unix.d from ../../../../R-3.3-branch/src/unix/sys-unix.c making sys-std.d from ../../../../R-3.3-branch/src/unix/sys-std.c making X11.d from ../../../../R-3.3-branch/src/unix/X11.c clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/unix/Rembedded.c -o Rembedded.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/unix/dynload.c -o dynload.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/unix/system.c -o system.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/unix/sys-unix.c -o sys-unix.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/unix/sys-std.c -o sys-std.o clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/unix/X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a clang -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -Wall -mtune=core2 -g -O2 -L/usr/local/lib -DR_HOME='"/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch"' \ -o Rscript ../../../../R-3.3-branch/src/unix/Rscript.c config.status: creating src/main/Makefile making CommandLineArgs.d from ../../../../R-3.3-branch/src/main/CommandLineArgs.c making Rdynload.d from ../../../../R-3.3-branch/src/main/Rdynload.c making RNG.d from ../../../../R-3.3-branch/src/main/RNG.c making Renviron.d from ../../../../R-3.3-branch/src/main/Renviron.c making agrep.d from ../../../../R-3.3-branch/src/main/agrep.c making apply.d from ../../../../R-3.3-branch/src/main/apply.c making arithmetic.d from ../../../../R-3.3-branch/src/main/arithmetic.c making array.d from ../../../../R-3.3-branch/src/main/array.c making attrib.d from ../../../../R-3.3-branch/src/main/attrib.c making bind.d from ../../../../R-3.3-branch/src/main/bind.c making builtin.d from ../../../../R-3.3-branch/src/main/builtin.c making character.d from ../../../../R-3.3-branch/src/main/character.c making coerce.d from ../../../../R-3.3-branch/src/main/coerce.c making colors.d from ../../../../R-3.3-branch/src/main/colors.c making complex.d from ../../../../R-3.3-branch/src/main/complex.c making connections.d from ../../../../R-3.3-branch/src/main/connections.c making context.d from ../../../../R-3.3-branch/src/main/context.c making cum.d from ../../../../R-3.3-branch/src/main/cum.c making dcf.d from ../../../../R-3.3-branch/src/main/dcf.c making datetime.d from ../../../../R-3.3-branch/src/main/datetime.c making debug.d from ../../../../R-3.3-branch/src/main/debug.c making deparse.d from ../../../../R-3.3-branch/src/main/deparse.c making devices.d from ../../../../R-3.3-branch/src/main/devices.c making dotcode.d from ../../../../R-3.3-branch/src/main/dotcode.c making dounzip.d from ../../../../R-3.3-branch/src/main/dounzip.c making dstruct.d from ../../../../R-3.3-branch/src/main/dstruct.c making duplicate.d from ../../../../R-3.3-branch/src/main/duplicate.c making edit.d from ../../../../R-3.3-branch/src/main/edit.c making engine.d from ../../../../R-3.3-branch/src/main/engine.c making envir.d from ../../../../R-3.3-branch/src/main/envir.c making errors.d from ../../../../R-3.3-branch/src/main/errors.c making eval.d from ../../../../R-3.3-branch/src/main/eval.c making format.d from ../../../../R-3.3-branch/src/main/format.c making gevents.d from ../../../../R-3.3-branch/src/main/gevents.c making gram.d from ../../../../R-3.3-branch/src/main/gram.c making gram-ex.d from ../../../../R-3.3-branch/src/main/gram-ex.c making graphics.d from ../../../../R-3.3-branch/src/main/graphics.c making grep.d from ../../../../R-3.3-branch/src/main/grep.c making identical.d from ../../../../R-3.3-branch/src/main/identical.c making inlined.d from ../../../../R-3.3-branch/src/main/inlined.c making inspect.d from ../../../../R-3.3-branch/src/main/inspect.c making internet.d from ../../../../R-3.3-branch/src/main/internet.c making iosupport.d from ../../../../R-3.3-branch/src/main/iosupport.c making lapack.d from ../../../../R-3.3-branch/src/main/lapack.c making list.d from ../../../../R-3.3-branch/src/main/list.c making localecharset.d from ../../../../R-3.3-branch/src/main/localecharset.c making logic.d from ../../../../R-3.3-branch/src/main/logic.c making main.d from ../../../../R-3.3-branch/src/main/main.c making mapply.d from ../../../../R-3.3-branch/src/main/mapply.c making match.d from ../../../../R-3.3-branch/src/main/match.c making memory.d from ../../../../R-3.3-branch/src/main/memory.c making names.d from ../../../../R-3.3-branch/src/main/names.c making objects.d from ../../../../R-3.3-branch/src/main/objects.c making options.d from ../../../../R-3.3-branch/src/main/options.c making paste.d from ../../../../R-3.3-branch/src/main/paste.c making platform.d from ../../../../R-3.3-branch/src/main/platform.c making plot.d from ../../../../R-3.3-branch/src/main/plot.c making plot3d.d from ../../../../R-3.3-branch/src/main/plot3d.c making plotmath.d from ../../../../R-3.3-branch/src/main/plotmath.c making print.d from ../../../../R-3.3-branch/src/main/print.c making printarray.d from ../../../../R-3.3-branch/src/main/printarray.c making printvector.d from ../../../../R-3.3-branch/src/main/printvector.c making printutils.d from ../../../../R-3.3-branch/src/main/printutils.c making qsort.d from ../../../../R-3.3-branch/src/main/qsort.c making radixsort.d from ../../../../R-3.3-branch/src/main/radixsort.c making random.d from ../../../../R-3.3-branch/src/main/random.c making raw.d from ../../../../R-3.3-branch/src/main/raw.c making registration.d from ../../../../R-3.3-branch/src/main/registration.c making relop.d from ../../../../R-3.3-branch/src/main/relop.c making rlocale.d from ../../../../R-3.3-branch/src/main/rlocale.c making saveload.d from ../../../../R-3.3-branch/src/main/saveload.c making scan.d from ../../../../R-3.3-branch/src/main/scan.c making seq.d from ../../../../R-3.3-branch/src/main/seq.c making serialize.d from ../../../../R-3.3-branch/src/main/serialize.c making sort.d from ../../../../R-3.3-branch/src/main/sort.c making source.d from ../../../../R-3.3-branch/src/main/source.c making split.d from ../../../../R-3.3-branch/src/main/split.c making sprintf.d from ../../../../R-3.3-branch/src/main/sprintf.c making startup.d from ../../../../R-3.3-branch/src/main/startup.c making subassign.d from ../../../../R-3.3-branch/src/main/subassign.c making subscript.d from ../../../../R-3.3-branch/src/main/subscript.c making subset.d from ../../../../R-3.3-branch/src/main/subset.c making summary.d from ../../../../R-3.3-branch/src/main/summary.c making sysutils.d from ../../../../R-3.3-branch/src/main/sysutils.c making times.d from ../../../../R-3.3-branch/src/main/times.c making unique.d from ../../../../R-3.3-branch/src/main/unique.c making util.d from ../../../../R-3.3-branch/src/main/util.c making version.d from ../../../../R-3.3-branch/src/main/version.c making g_alab_her.d from ../../../../R-3.3-branch/src/main/g_alab_her.c making g_cntrlify.d from ../../../../R-3.3-branch/src/main/g_cntrlify.c making g_fontdb.d from ../../../../R-3.3-branch/src/main/g_fontdb.c making g_her_glyph.d from ../../../../R-3.3-branch/src/main/g_her_glyph.c making Rmain.d from ../../../../R-3.3-branch/src/main/Rmain.c making alloca.d from ../../../../R-3.3-branch/src/main/alloca.c making mkdtemp.d from ../../../../R-3.3-branch/src/main/mkdtemp.c making strdup.d from ../../../../R-3.3-branch/src/main/strdup.c making strncasecmp.d from ../../../../R-3.3-branch/src/main/strncasecmp.c clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/CommandLineArgs.c -o CommandLineArgs.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/Rdynload.c -o Rdynload.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/Renviron.c -o Renviron.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/RNG.c -o RNG.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/agrep.c -o agrep.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/apply.c -o apply.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/arithmetic.c -o arithmetic.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/array.c -o array.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/attrib.c -o attrib.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/bind.c -o bind.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/builtin.c -o builtin.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/character.c -o character.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/coerce.c -o coerce.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/colors.c -o colors.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/complex.c -o complex.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/connections.c -o connections.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/context.c -o context.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/cum.c -o cum.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/dcf.c -o dcf.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/datetime.c -o datetime.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/debug.c -o debug.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/deparse.c -o deparse.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/devices.c -o devices.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/dotcode.c -o dotcode.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/dounzip.c -o dounzip.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/dstruct.c -o dstruct.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/duplicate.c -o duplicate.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/edit.c -o edit.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/engine.c -o engine.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/envir.c -o envir.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/errors.c -o errors.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/eval.c -o eval.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/format.c -o format.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/gevents.c -o gevents.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/gram.c -o gram.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/gram-ex.c -o gram-ex.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/graphics.c -o graphics.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/grep.c -o grep.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/identical.c -o identical.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/inlined.c -o inlined.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/inspect.c -o inspect.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/internet.c -o internet.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/iosupport.c -o iosupport.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/lapack.c -o lapack.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/list.c -o list.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/localecharset.c -o localecharset.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/logic.c -o logic.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/main.c -o main.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/mapply.c -o mapply.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/match.c -o match.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath 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../../../../R-3.3-branch/src/main/random.c -o random.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/raw.c -o raw.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/registration.c -o registration.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/relop.c -o relop.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/rlocale.c -o rlocale.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/saveload.c -o saveload.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/scan.c -o scan.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/seq.c -o seq.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/serialize.c -o serialize.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/sort.c -o sort.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/source.c -o source.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/split.c -o split.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/sprintf.c -o sprintf.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/startup.c -o startup.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/subassign.c -o subassign.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/subscript.c -o subscript.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/subset.c -o subset.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/summary.c -o summary.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/sysutils.c -o sysutils.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/times.c -o times.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/unique.c -o unique.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/util.c -o util.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/version.c -o version.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/g_alab_her.c -o g_alab_her.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/g_cntrlify.c -o g_cntrlify.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/g_fontdb.c -o g_fontdb.o clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/g_her_glyph.c -o g_her_glyph.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../R-3.3-branch/src/main/xxxpr.f -o xxxpr.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -install_name libR.dylib -compatibility_version 3.3.0 -current_version 3.3.3 -headerpad_max_install_names -o libR.dylib CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a ../extra/intl/libintl.a ../extra/tzone/libtz.a -L../../lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -Wl,-framework -Wl,CoreFoundation -lreadline -lpcre -llzma -lbz2 -lz -licucore -lm -liconv mkdir /Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/bin/exec clang -I../../../../R-3.3-branch/src/extra -I. -I../../src/include -I../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I../../../../R-3.3-branch/src/nmath -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../R-3.3-branch/src/main/Rmain.c -o Rmain.o clang -L../../lib -L/usr/local/lib -o R.bin Rmain.o -lR -lRblas making Lapack.d from ../../../../../R-3.3-branch/src/modules/lapack/Lapack.c making devX11.d from ../../../../../R-3.3-branch/src/modules/X11/devX11.c making rotated.d from ../../../../../R-3.3-branch/src/modules/X11/rotated.c making rbitmap.d from ../../../../../R-3.3-branch/src/modules/X11/rbitmap.c making Rsock.d from ../../../../../R-3.3-branch/src/modules/internet/Rsock.c making Rhttpd.d from ../../../../../R-3.3-branch/src/modules/internet/Rhttpd.c making internet.d from ../../../../../R-3.3-branch/src/modules/internet/internet.c making libcurl.d from ../../../../../R-3.3-branch/src/modules/internet/libcurl.c making nanoftp.d from ../../../../../R-3.3-branch/src/modules/internet/nanoftp.c making sockconn.d from ../../../../../R-3.3-branch/src/modules/internet/sockconn.c making nanohttp.d from ../../../../../R-3.3-branch/src/modules/internet/nanohttp.c making sock.d from ../../../../../R-3.3-branch/src/modules/internet/sock.c gfortran-4.8 -fPIC -g -O2 -ffloat-store -c ../../../../../R-3.3-branch/src/modules/lapack/dlamch.f -o dlamch.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../../R-3.3-branch/src/modules/lapack/dlapack.f -o dlapack.o gfortran-4.8 -fopenmp -fPIC -g -O2 -c ../../../../../R-3.3-branch/src/modules/lapack/cmplx.f -o cmplx.o clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/internet/Rhttpd.c -o Rhttpd.o clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/internet/Rsock.c -o Rsock.o clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/internet/internet.c -o internet.o clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/internet/libcurl.c -o libcurl.o clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/internet/nanoftp.c -o nanoftp.o clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/internet/nanohttp.c -o nanohttp.o clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/internet/sock.c -o sock.o clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/internet/sockconn.c -o sockconn.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../lib -L/usr/local/lib -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR -Wl,-framework -Wl,CoreFoundation mkdir /Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/modules clang -I/usr/local/include/libpng15 -I/usr/local/include -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/cairo -I/usr/local/include/freetype2 -I/usr/local/include -I/opt/X11/include -I/usr/local/include/cairo -I/usr/local/include/freetype2 -I/usr/local/include -I/opt/X11/include -I/usr/local/include/pixman-1 -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I../../../../../R-3.3-branch/src/library/grDevices/src/cairo -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/X11/devX11.c -o devX11.o clang -I/usr/local/include/libpng15 -I/usr/local/include -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/cairo -I/usr/local/include/freetype2 -I/usr/local/include -I/opt/X11/include -I/usr/local/include/cairo -I/usr/local/include/freetype2 -I/usr/local/include -I/opt/X11/include -I/usr/local/include/pixman-1 -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I../../../../../R-3.3-branch/src/library/grDevices/src/cairo -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/X11/rotated.c -o rotated.o clang -I/usr/local/include/libpng15 -I/usr/local/include -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/cairo -I/usr/local/include/freetype2 -I/usr/local/include -I/opt/X11/include -I/usr/local/include/cairo -I/usr/local/include/freetype2 -I/usr/local/include -I/opt/X11/include -I/usr/local/include/pixman-1 -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I../../../../../R-3.3-branch/src/library/grDevices/src/cairo -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/X11/rbitmap.c -o rbitmap.o clang -I/usr/local/include/libpng15 -I/usr/local/include -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/cairo -I/usr/local/include/freetype2 -I/usr/local/include -I/opt/X11/include -I/usr/local/include/cairo -I/usr/local/include/freetype2 -I/usr/local/include -I/opt/X11/include -I/usr/local/include/pixman-1 -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I../../../../../R-3.3-branch/src/library/grDevices/src/cairo -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/X11/dataentry.c -o dataentry.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../lib -L/usr/local/lib -o R_X11.so devX11.o rotated.o rbitmap.o -L/usr/local/lib -ltiff -ljpeg -L/usr/local/lib -lpng15 -lSM -lICE -L/opt/X11/lib -L/usr/local/lib -lz -lSM -lICE -lX11 -lXext /usr/local/lib/libcairo.a /usr/local/lib/libpixman-1.a -lz -lXrender -lSM -lICE -lX11 -lXext -lpixman-1 /usr/local/lib/libfontconfig.a /usr/local/lib/libfreetype.a -lxml2 -lpthread -lz -lm /usr/local/lib/libfreetype.a /usr/local/lib/libfontconfig.a -lz -lbz2 -lxml2 -lz -lbz2 -lpng15 -lz -L/opt/X11/lib -lX11 -lXt -lXmu -lR -Wl,-framework -Wl,CoreFoundation clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../lib -L/usr/local/lib -o R_de.so dataentry.o -lSM -lICE -L/opt/X11/lib -L/usr/local/lib -lz -lSM -lICE -lX11 -lXext /usr/local/lib/libcairo.a /usr/local/lib/libpixman-1.a -lz -lXrender -lSM -lICE -lX11 -lXext -lpixman-1 /usr/local/lib/libfontconfig.a /usr/local/lib/libfreetype.a -lxml2 -lpthread -lz -lm /usr/local/lib/libfreetype.a /usr/local/lib/libfontconfig.a -lz -lbz2 -lxml2 -lz -lbz2 -lpng15 -lz -L/opt/X11/lib -lX11 -lXt -lXmu -lR -Wl,-framework -Wl,CoreFoundation clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o libRlapack.dylib dlamch.o dlapack.o cmplx.o -install_name libRlapack.dylib -compatibility_version 3.3.0 -current_version 3.3.3 -headerpad_max_install_names -L../../../lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -L../../../lib -lR clang -I. -I../../../src/include -I../../../../../R-3.3-branch/src/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../R-3.3-branch/src/modules/lapack/Lapack.c -o Lapack.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../lib -L/usr/local/lib -o lapack.so Lapack.o -lR -Wl,-framework -Wl,CoreFoundation -L../../../lib -lRlapack -L../../../lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm /Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib/libRlapack.dylib is unchanged mkdir ../../library building system startup profile mkdir ../../../library/base mkdir ../../../library/base/R building package 'translations' mkdir ../../../library/translations building package 'base' mkdir ../../../library/base/demo building package 'tools' mkdir ../../../library/tools mkdir ../../../library/tools/R making text.d from ../../../../../../R-3.3-branch/src/library/tools/src/text.c making init.d from ../../../../../../R-3.3-branch/src/library/tools/src/init.c making Rmd5.d from ../../../../../../R-3.3-branch/src/library/tools/src/Rmd5.c making md5.d from ../../../../../../R-3.3-branch/src/library/tools/src/md5.c making signals.d from ../../../../../../R-3.3-branch/src/library/tools/src/signals.c making install.d from ../../../../../../R-3.3-branch/src/library/tools/src/install.c making getfmts.d from ../../../../../../R-3.3-branch/src/library/tools/src/getfmts.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/text.c -o text.o making http.d from ../../../../../../R-3.3-branch/src/library/tools/src/http.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/init.c -o init.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/Rmd5.c -o Rmd5.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/md5.c -o md5.o making gramRd.d from ../../../../../../R-3.3-branch/src/library/tools/src/gramRd.c making gramLatex.d from ../../../../../../R-3.3-branch/src/library/tools/src/gramLatex.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/signals.c -o signals.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/install.c -o install.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/getfmts.c -o getfmts.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/http.c -o http.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/gramLatex.c -o gramLatex.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tools/src/gramRd.c -o gramRd.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/tools/libs installing 'sysdata.rda' building package 'compiler' mkdir ../../../library/compiler mkdir ../../../library/compiler/R byte-compiling package 'compiler' byte-compiling package 'base' byte-compiling package 'tools' building package 'utils' mkdir ../../../library/utils mkdir ../../../library/utils/doc mkdir ../../../library/utils/R mkdir ../../../library/utils/Sweave mkdir ../../../library/utils/misc making init.d from ../../../../../../R-3.3-branch/src/library/utils/src/init.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/utils/src/init.c -o init.o making io.d from ../../../../../../R-3.3-branch/src/library/utils/src/io.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/utils/src/io.c -o io.o making size.d from ../../../../../../R-3.3-branch/src/library/utils/src/size.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/utils/src/size.c -o size.o making sock.d from ../../../../../../R-3.3-branch/src/library/utils/src/sock.c making stubs.d from ../../../../../../R-3.3-branch/src/library/utils/src/stubs.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/utils/src/sock.c -o sock.o making utils.d from ../../../../../../R-3.3-branch/src/library/utils/src/utils.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/utils/src/stubs.c -o stubs.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/utils/src/utils.c -o utils.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/utils/libs installing 'sysdata.rda' byte-compiling package 'utils' building package 'grDevices' mkdir ../../../library/grDevices mkdir ../../../library/grDevices/R mkdir ../../../library/grDevices/afm mkdir ../../../library/grDevices/enc mkdir ../../../library/grDevices/icc making axis_scales.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/axis_scales.c making chull.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/chull.c making devices.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/devices.c making init.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/init.c making stubs.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/stubs.c making colors.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/colors.c making devCairo.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/devCairo.c making devPicTeX.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/devPicTeX.c making devPS.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/devPS.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/axis_scales.c -o axis_scales.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/chull.c -o chull.o making devQuartz.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/devices.c -o devices.o making qdBitmap.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/qdBitmap.c making qdPDF.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/qdPDF.c making qdCocoa.d from ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/init.c -o init.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/stubs.c -o stubs.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/colors.c -o colors.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/devCairo.c -o devCairo.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/devPicTeX.c -o devPicTeX.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/devPS.c -o devPS.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c -o devQuartz.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/qdBitmap.c -o qdBitmap.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grDevices/src/qdPDF.c -o qdPDF.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -fobjc-exceptions -c ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m -o qdCocoa.o
../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c:646:23: warning: 'ATSFontFindFromName' is deprecated: first deprecated in OS X 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c:648:27: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in OS X 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault); ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here ATSFontFindFromPostScriptName( ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c:675:27: warning: 'ATSFontFindFromName' is deprecated: first deprecated in OS X 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c:676:41: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in OS X 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] if (!atsFont) atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault); ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here ATSFontFindFromPostScriptName( ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c:682:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in OS X 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c:688:39: warning: 'ATSFontFindFromName' is deprecated: first deprecated in OS X 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c:696:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in OS X 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c:715:12: warning: 'CGFontCreateWithPlatformFont' is deprecated: first deprecated in OS X 10.6 [-Wdeprecated-declarations] return CGFontCreateWithPlatformFont(&atsFont); ^ /System/Library/Frameworks/CoreGraphics.framework/Headers/CGFont.h:61:21: note: 'CGFontCreateWithPlatformFont' has been explicitly marked deprecated here CG_EXTERN CGFontRef CGFontCreateWithPlatformFont(void *platformFontReference) ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/devQuartz.c:997:5: warning: 'CGContextShowGlyphsWithAdvances' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations] CGContextShowGlyphsWithAdvances(ctx,glyphs, g_adv, len); ^ /System/Library/Frameworks/CoreGraphics.framework/Headers/CGContext.h:1023:16: note: 'CGContextShowGlyphsWithAdvances' has been explicitly marked deprecated here CG_EXTERN void CGContextShowGlyphsWithAdvances(CGContextRef context, ^ 9 warnings generated. ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m:99:23: warning: sending 'QuartzCocoaView *' to parameter of incompatible type 'id' [window setDelegate: view]; ^~~~ /System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:319:44: note: passing argument to parameter 'anObject' here - (void)setDelegate:(id )anObject; ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m:83:14: warning: unused variable 'canvasColor' [-Wunused-variable] NSColor* canvasColor = nil; ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m:266:6: warning: 'setRequiredFileType:' is deprecated: first deprecated in OS X 10.6 [-Wdeprecated-declarations] [sp setRequiredFileType:@"pdf"]; ^ /System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:305:1: note: 'setRequiredFileType:' has been explicitly marked deprecated here - (void)setRequiredFileType:(NSString *)type NS_DEPRECATED_MAC(10_0, 10_6); ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m:268:19: warning: 'runModalForDirectory:file:' is deprecated: first deprecated in OS X 10.6 [-Wdeprecated-declarations] int answer = [sp runModalForDirectory:nil file:@"Rplot.pdf"]; ^ /System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:313:1: note: 'runModalForDirectory:file:' has been explicitly marked deprecated here - (NSInteger)runModalForDirectory:(NSString *)path file:(NSString *)name NS_DEPRECATED_MAC(10_0, 10_6); ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m:270:29: warning: 'filename' is deprecated: first deprecated in OS X 10.6 [-Wdeprecated-declarations] if (![self writeAsPDF:[sp filename]]) NSBeep(); ^ /System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:295:1: note: 'filename' has been explicitly marked deprecated here - (NSString *)filename NS_DEPRECATED_MAC(10_0, 10_6); ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m:613:13: warning: 'GetFrontProcess' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations] if (GetFrontProcess(&frProc) == noErr) { ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:434:1: note: 'GetFrontProcess' has been explicitly marked deprecated here GetFrontProcess(ProcessSerialNumber * PSN) AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9; ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m:614:17: warning: 'GetCurrentProcess' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations] if (GetCurrentProcess(&myProc) == noErr) { ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:415:1: note: 'GetCurrentProcess' has been explicitly marked deprecated here MacGetCurrentProcess(ProcessSerialNumber * PSN) AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9; ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:412:34: note: expanded from macro 'MacGetCurrentProcess' #define MacGetCurrentProcess GetCurrentProcess ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m:615:21: warning: 'SameProcess' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations] if (SameProcess(&frProc, &myProc, &sameProc) == noErr && !sameProc) { ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:696:1: note: 'SameProcess' has been explicitly marked deprecated here SameProcess( ^ ../../../../../../R-3.3-branch/src/library/grDevices/src/qdCocoa.m:618:17: warning: 'SetFrontProcess' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations] SetFrontProcess(&myProc); ^ /System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:603:1: note: 'SetFrontProcess' has been explicitly marked deprecated here SetFrontProcess(const ProcessSerialNumber * PSN) AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9; ^ 9 warnings generated. clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o qdBitmap.o qdPDF.o qdCocoa.o -framework AppKit -lz -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/grDevices/libs making cairoBM.d from ../../../../../../../R-3.3-branch/src/library/grDevices/src/cairo/cairoBM.c clang -I. -I../../../../../src/include -I../../../../../../../R-3.3-branch/src/include -I/usr/local/include/cairo -I/usr/local/include/freetype2 -I/usr/local/include -I/opt/X11/include -I/usr/local/include/pixman-1 -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I/usr/local/include/freetype2 -I/usr/local/include/libpng15 -I/usr/include/libxml2 -I../../../../../../../R-3.3-branch/src/modules/X11 -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -DHAVE_CONFIG_H -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../../R-3.3-branch/src/library/grDevices/src/cairo/cairoBM.c -o cairoBM.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../../lib -L/usr/local/lib -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -L/usr/local/lib -ltiff -ljpeg -L/usr/local/lib -lpng15 -L/opt/X11/lib -L/usr/local/lib -lz /usr/local/lib/libcairo.a /usr/local/lib/libpixman-1.a -lz -lXrender -lSM -lICE -lX11 -lXext -lpixman-1 /usr/local/lib/libfontconfig.a /usr/local/lib/libfreetype.a -lxml2 -lpthread -lz -lm /usr/local/lib/libfreetype.a /usr/local/lib/libfontconfig.a -lz -lbz2 -lxml2 -lz -lbz2 -lpng15 -lz -L../../../../../lib -lR -Wl,-framework -Wl,CoreFoundation byte-compiling package 'grDevices' building package 'graphics' mkdir ../../../library/graphics mkdir ../../../library/graphics/R making init.d from ../../../../../../R-3.3-branch/src/library/graphics/src/init.c making base.d from ../../../../../../R-3.3-branch/src/library/graphics/src/base.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/graphics/src/init.c -o init.o making graphics.d from ../../../../../../R-3.3-branch/src/library/graphics/src/graphics.c making par.d from ../../../../../../R-3.3-branch/src/library/graphics/src/par.c making plot.d from ../../../../../../R-3.3-branch/src/library/graphics/src/plot.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/graphics/src/base.c -o base.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/graphics/src/graphics.c -o graphics.o making plot3d.d from ../../../../../../R-3.3-branch/src/library/graphics/src/plot3d.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/graphics/src/par.c -o par.o making stem.d from ../../../../../../R-3.3-branch/src/library/graphics/src/stem.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/graphics/src/plot.c -o plot.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/graphics/src/plot3d.c -o plot3d.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.3-branch/src/main -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/graphics/src/stem.c -o stem.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/graphics/libs byte-compiling package 'graphics' building package 'stats' mkdir ../../../library/stats mkdir ../../../library/stats/R making init.d from ../../../../../../R-3.3-branch/src/library/stats/src/init.c making kmeans.d from ../../../../../../R-3.3-branch/src/library/stats/src/kmeans.c making ansari.d from ../../../../../../R-3.3-branch/src/library/stats/src/ansari.c making bandwidths.d from ../../../../../../R-3.3-branch/src/library/stats/src/bandwidths.c making chisqsim.d from ../../../../../../R-3.3-branch/src/library/stats/src/chisqsim.c making d2x2xk.d from ../../../../../../R-3.3-branch/src/library/stats/src/d2x2xk.c making fexact.d from ../../../../../../R-3.3-branch/src/library/stats/src/fexact.c making kendall.d from ../../../../../../R-3.3-branch/src/library/stats/src/kendall.c making ks.d from ../../../../../../R-3.3-branch/src/library/stats/src/ks.c making line.d from ../../../../../../R-3.3-branch/src/library/stats/src/line.c making smooth.d from ../../../../../../R-3.3-branch/src/library/stats/src/smooth.c making prho.d from ../../../../../../R-3.3-branch/src/library/stats/src/prho.c making swilk.d from ../../../../../../R-3.3-branch/src/library/stats/src/swilk.c making ksmooth.d from ../../../../../../R-3.3-branch/src/library/stats/src/ksmooth.c making loessc.d from ../../../../../../R-3.3-branch/src/library/stats/src/loessc.c making monoSpl.d from ../../../../../../R-3.3-branch/src/library/stats/src/monoSpl.c making isoreg.d from ../../../../../../R-3.3-branch/src/library/stats/src/isoreg.c making Srunmed.d from ../../../../../../R-3.3-branch/src/library/stats/src/Srunmed.c making dblcen.d from ../../../../../../R-3.3-branch/src/library/stats/src/dblcen.c making distance.d from ../../../../../../R-3.3-branch/src/library/stats/src/distance.c making hclust-utils.d from ../../../../../../R-3.3-branch/src/library/stats/src/hclust-utils.c making nls.d from ../../../../../../R-3.3-branch/src/library/stats/src/nls.c making rWishart.d from ../../../../../../R-3.3-branch/src/library/stats/src/rWishart.c making HoltWinters.d from ../../../../../../R-3.3-branch/src/library/stats/src/HoltWinters.c making PPsum.d from ../../../../../../R-3.3-branch/src/library/stats/src/PPsum.c making arima.d from ../../../../../../R-3.3-branch/src/library/stats/src/arima.c making burg.d from ../../../../../../R-3.3-branch/src/library/stats/src/burg.c making filter.d from ../../../../../../R-3.3-branch/src/library/stats/src/filter.c making mAR.d from ../../../../../../R-3.3-branch/src/library/stats/src/mAR.c making pacf.d from ../../../../../../R-3.3-branch/src/library/stats/src/pacf.c making starma.d from ../../../../../../R-3.3-branch/src/library/stats/src/starma.c making port.d from ../../../../../../R-3.3-branch/src/library/stats/src/port.c making family.d from ../../../../../../R-3.3-branch/src/library/stats/src/family.c making sbart.d from ../../../../../../R-3.3-branch/src/library/stats/src/sbart.c making approx.d from ../../../../../../R-3.3-branch/src/library/stats/src/approx.c making loglin.d from ../../../../../../R-3.3-branch/src/library/stats/src/loglin.c making lowess.d from ../../../../../../R-3.3-branch/src/library/stats/src/lowess.c making massdist.d from ../../../../../../R-3.3-branch/src/library/stats/src/massdist.c making splines.d from ../../../../../../R-3.3-branch/src/library/stats/src/splines.c making lm.d from ../../../../../../R-3.3-branch/src/library/stats/src/lm.c making complete_cases.d from ../../../../../../R-3.3-branch/src/library/stats/src/complete_cases.c making cov.d from ../../../../../../R-3.3-branch/src/library/stats/src/cov.c making deriv.d from ../../../../../../R-3.3-branch/src/library/stats/src/deriv.c making fft.d from ../../../../../../R-3.3-branch/src/library/stats/src/fft.c making fourier.d from ../../../../../../R-3.3-branch/src/library/stats/src/fourier.c making model.d from ../../../../../../R-3.3-branch/src/library/stats/src/model.c making optim.d from ../../../../../../R-3.3-branch/src/library/stats/src/optim.c making optimize.d from ../../../../../../R-3.3-branch/src/library/stats/src/optimize.c making integrate.d from ../../../../../../R-3.3-branch/src/library/stats/src/integrate.c making random.d from ../../../../../../R-3.3-branch/src/library/stats/src/random.c making distn.d from ../../../../../../R-3.3-branch/src/library/stats/src/distn.c making zeroin.d from ../../../../../../R-3.3-branch/src/library/stats/src/zeroin.c making rcont.d from ../../../../../../R-3.3-branch/src/library/stats/src/rcont.c making influence.d from ../../../../../../R-3.3-branch/src/library/stats/src/influence.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/init.c -o init.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/kmeans.c -o kmeans.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/ansari.c -o ansari.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/bandwidths.c -o bandwidths.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/chisqsim.c -o chisqsim.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/d2x2xk.c -o d2x2xk.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/fexact.c -o fexact.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/kendall.c -o kendall.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/ks.c -o ks.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/line.c -o line.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/smooth.c -o smooth.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/prho.c -o prho.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/swilk.c -o swilk.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/ksmooth.c -o ksmooth.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/loessc.c -o loessc.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/monoSpl.c -o monoSpl.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/isoreg.c -o isoreg.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/Srunmed.c -o Srunmed.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/dblcen.c -o dblcen.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/distance.c -o distance.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/hclust-utils.c -o hclust-utils.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/nls.c -o nls.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/rWishart.c -o rWishart.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/HoltWinters.c -o HoltWinters.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/PPsum.c -o PPsum.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/arima.c -o arima.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/burg.c -o burg.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/filter.c -o filter.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/mAR.c -o mAR.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/pacf.c -o pacf.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/starma.c -o starma.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/port.c -o port.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/family.c -o family.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/sbart.c -o sbart.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/approx.c -o approx.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/loglin.c -o loglin.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/lowess.c -o lowess.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/massdist.c -o massdist.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/splines.c -o splines.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/lm.c -o lm.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/complete_cases.c -o complete_cases.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/cov.c -o cov.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/deriv.c -o deriv.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/fft.c -o fft.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/fourier.c -o fourier.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/model.c -o model.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/optim.c -o optim.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/optimize.c -o optimize.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/integrate.c -o integrate.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/random.c -o random.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/distn.c -o distn.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/zeroin.c -o zeroin.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/rcont.c -o rcont.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/influence.c -o influence.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/bsplvd.f -o bsplvd.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/bvalue.f -o bvalue.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/bvalus.f -o bvalus.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/loessf.f -o loessf.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/ppr.f -o ppr.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/qsbart.f -o qsbart.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/sgram.f -o sgram.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/sinerp.f -o sinerp.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/sslvrg.f -o sslvrg.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/stxwx.f -o stxwx.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/hclust.f -o hclust.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/kmns.f -o kmns.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/eureka.f -o eureka.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/stl.f -o stl.o gfortran-4.8 -fPIC -g -O2 -ffloat-store -c ../../../../../../R-3.3-branch/src/library/stats/src/portsrc.f -o portsrc.o gfortran-4.8 -fPIC -g -O2 -c ../../../../../../R-3.3-branch/src/library/stats/src/lminfl.f -o lminfl.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -L../../../../lib -lRlapack -L../../../../lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/stats/libs byte-compiling package 'stats' building package 'datasets' mkdir ../../../library/datasets mkdir ../../../library/datasets/data building package 'methods' mkdir ../../../library/methods mkdir ../../../library/methods/R making do_substitute_direct.d from ../../../../../../R-3.3-branch/src/library/methods/src/do_substitute_direct.c making init.d from ../../../../../../R-3.3-branch/src/library/methods/src/init.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/methods/src/do_substitute_direct.c -o do_substitute_direct.o making methods_list_dispatch.d from ../../../../../../R-3.3-branch/src/library/methods/src/methods_list_dispatch.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/methods/src/init.c -o init.o making slot.d from ../../../../../../R-3.3-branch/src/library/methods/src/slot.c making class_support.d from ../../../../../../R-3.3-branch/src/library/methods/src/class_support.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/methods/src/methods_list_dispatch.c -o methods_list_dispatch.o making tests.d from ../../../../../../R-3.3-branch/src/library/methods/src/tests.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/methods/src/slot.c -o slot.o making utils.d from ../../../../../../R-3.3-branch/src/library/methods/src/utils.c clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/methods/src/class_support.c -o class_support.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/methods/src/tests.c -o tests.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/methods/src/utils.c -o utils.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/methods/libs byte-compiling 'methods' initializing class and method definitions ... done building package 'grid' mkdir ../../../library/grid mkdir ../../../library/grid/doc mkdir ../../../library/grid/R making gpar.d from ../../../../../../R-3.3-branch/src/library/grid/src/gpar.c making grid.d from ../../../../../../R-3.3-branch/src/library/grid/src/grid.c making just.d from ../../../../../../R-3.3-branch/src/library/grid/src/just.c making layout.d from ../../../../../../R-3.3-branch/src/library/grid/src/layout.c making matrix.d from ../../../../../../R-3.3-branch/src/library/grid/src/matrix.c making register.d from ../../../../../../R-3.3-branch/src/library/grid/src/register.c making state.d from ../../../../../../R-3.3-branch/src/library/grid/src/state.c clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/gpar.c -o gpar.o clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/grid.c -o grid.o making unit.d from ../../../../../../R-3.3-branch/src/library/grid/src/unit.c clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/just.c -o just.o making util.d from ../../../../../../R-3.3-branch/src/library/grid/src/util.c clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/layout.c -o layout.o making viewport.d from ../../../../../../R-3.3-branch/src/library/grid/src/viewport.c clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/matrix.c -o matrix.o clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/register.c -o register.o clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/state.c -o state.o clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/unit.c -o unit.o clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/util.c -o util.o clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/grid/src/viewport.c -o viewport.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/grid/libs byte-compiling package 'grid' building package 'splines' mkdir ../../../library/splines mkdir ../../../library/splines/R clang -I../../../../include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/splines/src/splines.c -o splines.o making splines.d from ../../../../../../R-3.3-branch/src/library/splines/src/splines.c clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o splines.so splines.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/splines/libs byte-compiling package 'splines' building package 'stats4' mkdir ../../../library/stats4 mkdir ../../../library/stats4/R byte-compiling package 'stats4' building package 'tcltk' mkdir ../../../library/tcltk mkdir ../../../library/tcltk/R mkdir ../../../library/tcltk/exec clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/usr/X11/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tcltk/src/init.c -o init.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/usr/X11/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tcltk/src/tcltk.c -o tcltk.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/usr/X11/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/tcltk/src/tcltk_unix.c -o tcltk_unix.o making init.d from ../../../../../../R-3.3-branch/src/library/tcltk/src/init.c making tcltk_unix.d from ../../../../../../R-3.3-branch/src/library/tcltk/src/tcltk_unix.c making tcltk.d from ../../../../../../R-3.3-branch/src/library/tcltk/src/tcltk.c clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/local/lib -ltcl8.6 -L/usr/local/lib -ltk8.6 -L/usr/X11/lib -lX11 -Wl,-weak-lXss -lXext -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/tcltk/libs byte-compiling package 'tcltk' building package 'parallel' mkdir ../../../library/parallel mkdir ../../../library/parallel/doc mkdir ../../../library/parallel/R clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/parallel/src/init.c -o init.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/parallel/src/rngstream.c -o rngstream.o clang -I../../../../include -DNDEBUG -I../../../include -I../../../../../../R-3.3-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../../../../../../R-3.3-branch/src/library/parallel/src/fork.c -o fork.o making init.d from ../../../../../../R-3.3-branch/src/library/parallel/src/init.c making rngstream.d from ../../../../../../R-3.3-branch/src/library/parallel/src/rngstream.c making fork.d from ../../../../../../R-3.3-branch/src/library/parallel/src/fork.c clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/parallel/libs byte-compiling package 'parallel' installing parsed NAMESPACE files make[1]: Nothing to be done for `R'. you should 'make docs' now ... configuring Java ... Java interpreter : /usr/bin/java creating NEWS creating NEWS.pdf Java version : 1.6.0_65 Java home path : /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar System Java on macOS trying to compile and link a JNI program detected JNI cpp flags : -I/System/Library/Frameworks/JavaVM.framework/Headers detected JNI linker flags : -framework JavaVM clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c conftest.c -o conftest.o
conftest.c:4:5: warning: 'JNI_CreateJavaVM' is deprecated [-Wdeprecated-declarations] JNI_CreateJavaVM(0, 0, 0); ^ /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1937:1: note: 'JNI_CreateJavaVM' has been explicitly marked deprecated here JNI_CreateJavaVM(JavaVM **pvm, void **penv, void *args); ^ 1 warning generated. clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o conftest.so conftest.o -framework JavaVM -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation JAVA_HOME : /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home Java library path: JNI cpp flags : -I/System/Library/Frameworks/JavaVM.framework/Headers JNI linker flags : -framework JavaVM Updating Java configuration in /Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch Done. creating doc/manual/R-FAQ.html creating doc/manual/version.texi mkdir ../../doc/manual/images creating doc/manual/R-data.html creating doc/manual/R-admin.html creating doc/manual/R-exts.html creating doc/manual/R-ints.html creating doc/manual/R-intro.html creating doc/manual/R-lang.html installing parsed Rd compiler splines stats4 parallel tcltk tools grDevices datasets graphics grid methods utils stats base building/updating package metadata ... writing package indices begin installing recommended package lattice begin installing recommended package MASS begin installing recommended package foreign begin installing recommended package codetools begin installing recommended package rpart begin installing recommended package KernSmooth begin installing recommended package spatial begin installing recommended package nnet * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (codetools) * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c krc.c -o krc.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pps.c -o pps.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o spatial.so init.o krc.o pps.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c nnet.c -o nnet.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o nnet.so nnet.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** libs gfortran-4.8 -fPIC -g -O2 -c blkest.f -o blkest.o gfortran-4.8 -fPIC -g -O2 -c cp.f -o cp.o gfortran-4.8 -fPIC -g -O2 -c dgedi.f -o dgedi.o gfortran-4.8 -fPIC -g -O2 -c dgefa.f -o dgefa.o gfortran-4.8 -fPIC -g -O2 -c dgesl.f -o dgesl.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o gfortran-4.8 -fPIC -g -O2 -c linbin.f -o linbin.o gfortran-4.8 -fPIC -g -O2 -c linbin2D.f -o linbin2D.o gfortran-4.8 -fPIC -g -O2 -c locpoly.f -o locpoly.o gfortran-4.8 -fPIC -g -O2 -c rlbin.f -o rlbin.o gfortran-4.8 -fPIC -g -O2 -c sdiag.f -o sdiag.o gfortran-4.8 -fPIC -g -O2 -c sstdiag.f -o sstdiag.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c R_systat.c -o R_systat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c Rdbfread.c -o Rdbfread.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c Rdbfwrite.c -o Rdbfwrite.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c SASxport.c -o SASxport.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c avl.c -o avl.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dbfopen.c -o dbfopen.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c file-handle.c -o file-handle.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c format.c -o format.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c minitab.c -o minitab.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pfm-read.c -o pfm-read.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c sfm-read.c -o sfm-read.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c spss.c -o spss.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c stataread.c -o stataread.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c anova.c -o anova.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c anovapred.c -o anovapred.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c branch.c -o branch.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c bsplit.c -o bsplit.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c choose_surg.c -o choose_surg.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c fix_cp.c -o fix_cp.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c free_tree.c -o free_tree.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c gini.c -o gini.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c graycode.c -o graycode.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c insert_split.c -o insert_split.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c make_cp_list.c -o make_cp_list.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c make_cp_table.c -o make_cp_table.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c mysort.c -o mysort.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c nodesplit.c -o nodesplit.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c partition.c -o partition.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c poisson.c -o poisson.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pred_rpart.c -o pred_rpart.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c print_tree.c -o print_tree.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rpart.c -o rpart.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rpart_callback.c -o rpart_callback.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rpartexp.c -o rpartexp.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rpartexp2.c -o rpartexp2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rpcountup.c -o rpcountup.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rpmatrix.c -o rpmatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rundown.c -o rundown.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rundown2.c -o rundown2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c surrogate.c -o surrogate.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c usersplit.c -o usersplit.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c xpred.c -o xpred.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c xval.c -o xval.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c MASS.c -o MASS.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c lqs.c -o lqs.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o MASS.so MASS.o lqs.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) begin installing recommended package cluster begin installing recommended package class * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c class.c -o class.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o class.so class.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c threeDplot.c -o threeDplot.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o lattice.so init.o threeDplot.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (lattice) begin installing recommended package Matrix begin installing recommended package nlme * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c clara.c -o clara.o gfortran-4.8 -fPIC -g -O2 -c daisy.f -o daisy.o gfortran-4.8 -fPIC -g -O2 -c dysta.f -o dysta.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c fanny.c -o fanny.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o gfortran-4.8 -fPIC -g -O2 -c mona.f -o mona.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pam.c -o pam.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c sildist.c -o sildist.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c spannel.c -o spannel.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c twins.c -o twins.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (cluster) * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** libs gfortran-4.8 -fPIC -g -O2 -c chol.f -o chol.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c corStruct.c -o corStruct.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c gnls.c -o gnls.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c matrix.c -o matrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c nlOptimizer.c -o nlOptimizer.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c nlme.c -o nlme.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c nlmefit.c -o nlmefit.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pdMat.c -o pdMat.o gfortran-4.8 -fPIC -g -O2 -c rs.f -o rs.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o rs.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nlme) * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c CHMfactor.c -o CHMfactor.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c Csparse.c -o Csparse.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c TMatrix_as.c -o TMatrix_as.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c Tsparse.c -o Tsparse.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c Mutils.c -o Mutils.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c chm_common.c -o chm_common.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c cs.c -o cs.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c cs_utils.c -o cs_utils.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dense.c -o dense.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dgCMatrix.c -o dgCMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dgTMatrix.c -o dgTMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dgeMatrix.c -o dgeMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dpoMatrix.c -o dpoMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dppMatrix.c -o dppMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dsCMatrix.c -o dsCMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dsyMatrix.c -o dsyMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dspMatrix.c -o dspMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dtCMatrix.c -o dtCMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dtTMatrix.c -o dtTMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dtrMatrix.c -o dtrMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dtpMatrix.c -o dtpMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c factorizations.c -o factorizations.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ldense.c -o ldense.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c lgCMatrix.c -o lgCMatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c sparseQR.c -o sparseQR.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c abIndex.c -o abIndex.o ( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make ) clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_aat.c -o cholmod_aat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_add.c -o cholmod_add.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_band.c -o cholmod_band.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_common.c -o cholmod_common.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_complex.c -o cholmod_complex.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_copy.c -o cholmod_copy.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_dense.c -o cholmod_dense.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_error.c -o cholmod_error.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_factor.c -o cholmod_factor.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_memory.c -o cholmod_memory.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_sparse.c -o cholmod_sparse.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_transpose.c -o cholmod_transpose.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_triplet.c -o cholmod_triplet.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Core/cholmod_version.c -o cholmod_version.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Check/cholmod_check.c -o cholmod_check.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Check/cholmod_read.c -o cholmod_read.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Check/cholmod_write.c -o cholmod_write.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Modify/cholmod_updown.c -o cholmod_updown.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o ( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make lib ) clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c colamd_global.c -o colamd_global.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c colamd.c -o colamd.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o ( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make lib ) clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_1.c -o amd_i_1.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_2.c -o amd_i_2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_order.c -o amd_i_order.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_control.c -o amd_i_control.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_info.c -o amd_i_info.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDINT -c amd_global.c -o amd_i_global.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_i_dump.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_l_dump.o) has no symbols clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -DNTIMER -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lRlapack -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices ** building package indices Loading required package: Matrix ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) begin installing recommended package mgcv begin installing recommended package survival * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agexact.c -o agexact.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agfit4.c -o agfit4.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agfit5.c -o agfit5.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agmart.c -o agmart.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agmart2.c -o agmart2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agmart3.c -o agmart3.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agscore.c -o agscore.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agsurv3.c -o agsurv3.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agsurv4.c -o agsurv4.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c agsurv5.c -o agsurv5.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c chinv2.c -o chinv2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c chinv3.c -o chinv3.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c cholesky2.c -o cholesky2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c cholesky3.c -o cholesky3.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c chsolve2.c -o chsolve2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c chsolve3.c -o chsolve3.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c concordance1.c -o concordance1.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c cox_Rcallback.c -o cox_Rcallback.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxcount1.c -o coxcount1.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxdetail.c -o coxdetail.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxexact.c -o coxexact.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxfit5.c -o coxfit5.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxfit6.c -o coxfit6.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxmart.c -o coxmart.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxmart2.c -o coxmart2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxph_wtest.c -o coxph_wtest.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxsafe.c -o coxsafe.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxscho.c -o coxscho.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxscore.c -o coxscore.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c dmatrix.c -o dmatrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c doloop.c -o doloop.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c finegray.c -o finegray.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pyears1.c -o pyears1.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pyears2.c -o pyears2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pyears3b.c -o pyears3b.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pystep.c -o pystep.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survConcordance.c -o survConcordance.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survdiff2.c -o survdiff2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survfit4.c -o survfit4.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survfitci.c -o survfitci.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survpenal.c -o survpenal.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survreg6.c -o survreg6.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survreg7.c -o survreg7.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survregc1.c -o survregc1.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survregc2.c -o survregc2.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c survsplit.c -o survsplit.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c tmerge.c -o tmerge.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o finegray.o init.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) begin installing recommended package boot * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (boot) * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** libs clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c coxph.c -o coxph.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c discrete.c -o discrete.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c gdi.c -o gdi.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c magic.c -o magic.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c mat.c -o mat.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c matrix.c -o matrix.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c mgcv.c -o mgcv.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c misc.c -o misc.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c mvn.c -o mvn.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c qp.c -o qp.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c soap.c -o soap.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c sparse-smooth.c -o sparse-smooth.o clang -I/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c tprs.c -o tprs.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -L/usr/local/lib -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lRlapack -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/mavericks-x86_64/R-3.3-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Builds/CRAN-QA-Simon/R-build/mavericks-x86_64/R-3.3-branch/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mgcv) building/updating vignettes for package 'grid' ...
processing 'displaylist.Rnw' processing 'frame.Rnw' processing 'grid.Rnw' processing 'grobs.Rnw' processing 'interactive.Rnw' processing 'locndimn.Rnw' processing 'moveline.Rnw' processing 'nonfinite.Rnw' processing 'plotexample.Rnw' processing 'rotated.Rnw' processing 'saveload.Rnw' processing 'sharing.Rnw' processing 'viewports.Rnw' building/updating vignettes for package 'parallel' ...
processing 'parallel.Rnw' building/updating vignettes for package 'utils' ...
processing 'Sweave.Rnw' [[system return code 0x0]]